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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018327.1_13933_14335_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13933 - 14335
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTTTGATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTTCTTTTGATA
Flanking Amino Acid:
TQQPAPTTSESRKNPMGLII
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
81.3
0.7
0.9
80.1
32
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
66.8
0.52
1.1
74.7
30

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002543
Chromosome:
PEDO01018327.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029484
1206 - 23878
22673
ENSAPLT00000009774
584 - 24792
24209
ENSAPLT00000002625
3 - 23878
23876