Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018327.1_1451_1692_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1451 - 1692

Intron Length:

242

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTACAGTAT

5'SS Class:

major

3'SS Sequence:

CAGCTCTATGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

ATTTTCCTATTT

Flanking Amino Acid:

PEQTQIRVNIAHAAFPDFLR

Intron Amino Acid Position:

1036

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.8

0.35

1.1

61.8

39.1

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

48.5

-0

1.7

54.4

40.2

Minor 5ss

36.8

-1.5

3.6

51.8

47.2

Minor BPS

55.7

0.26

1.9

78.59

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002543

Chromosome:

PEDO01018327.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029484

1206 - 23878

22673