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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018327.1_17377_18094_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17377 - 18094
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGAAAT
5'SS Class:
major
3'SS Sequence:
CTTTTATTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAG
Flanking Amino Acid:
LEFNLFGIPYIGADICGFFD
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
75.4
33.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78
0.63
1
78.8
32.5
Minor 5ss
43.7
-0.7
3
62.2
42.5
Minor BPS
66.5
0.38
1.7
73.73
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002543
Chromosome:
PEDO01018327.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029484
1206 - 23878
22673
ENSAPLT00000009774
584 - 24792
24209
ENSAPLT00000002625
3 - 23878
23876