About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018327.1_1766_2041_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1766 - 2041
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTATTC
5'SS Class:
major
3'SS Sequence:
CTTTGTCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CATTGTTTAATT
Flanking Amino Acid:
PNTNDIIYSKVWPFLPNVTV
Intron Amino Acid Position:
1030

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
69
36.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79
0.65
0.8
73.2
31.9
Minor 5ss
41.5
-0.9
3.3
59.7
44.9
Minor BPS
62.8
0.48
1.8
76.34
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002543
Chromosome:
PEDO01018327.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029484
1206 - 23878
22673
ENSAPLT00000009774
584 - 24792
24209
ENSAPLT00000002625
3 - 23878
23876