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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018327.1_18748_20143_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18748 - 20143
Intron Length:
1396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTCTTTATTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTTCTTTATT
Flanking Amino Acid:
NDLNYPPFTPSILDKLMFSK
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.7
0.62
1
79.7
31.1
Minor 5ss
40
-1.1
3
55.9
42.3
Minor BPS
69.3
0.69
1.6
84.19
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002543
Chromosome:
PEDO01018327.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029484
1206 - 23878
22673
ENSAPLT00000009774
584 - 24792
24209
ENSAPLT00000002625
3 - 23878
23876