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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018327.1_2999_3096_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2999 - 3096
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGATTC
5'SS Class:
major
3'SS Sequence:
TTCTTATTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
PELVVQEYTELIGRPVMPPY
Intron Amino Acid Position:
909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
69.7
36.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.3
0.77
0.7
77.7
35.7
Minor 5ss
42.8
-0.8
3.4
59
40.1
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002543
Chromosome:
PEDO01018327.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029484
1206 - 23878
22673
ENSAPLT00000009774
584 - 24792
24209
ENSAPLT00000002625
3 - 23878
23876