Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018361.1_343_438_F

Intron Information:

Intron Rank:

136379

Intron Class:

major

Intron Phase:

Intron Coordinates:

343 - 438

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CCCTGCTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCACTTTTCATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

75.3

40.8

Major BPS

100

1.24

0.5

100

Major PPT

68.5

0.42

36.7

Minor 5ss

36.4

-1.5

2.9

43.6

43.3

Minor BPS

47.7

-0.2

1.7

55.34

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023488

Chromosome:

PEDO01018361.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044208

21 - 1090

1070