Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018366.1_3204_3370_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3204 - 3370

Intron Length:

167

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAACC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTCCGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

TGTGCCTTACTC

Flanking Amino Acid:

GVLAKTKPHQKQMFQERSGR

Intron Amino Acid Position:

201

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.8

77.7

30.1

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

0.79

0.8

80.9

31.1

Minor 5ss

29.3

-2.4

2.8

35.3

40.9

Minor BPS

61.6

0.34

1.7

70.68

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026623

Chromosome:

PEDO01018366.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031986

2604 - 3603

1000