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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018384.1_744_920_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
744 - 920
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
GTGCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCGTGCTCACCC
Flanking Amino Acid:
CNYPTSMMDLRMLASFKLPA
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.4
35.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
65.9
0.36
0.9
58.5
33
Minor 5ss
30.7
-2.2
3.1
41.6
38.8
Minor BPS
42.9
-0.5
2.2
49.56
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023707
Chromosome:
PEDO01018384.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047044
79 - 1831
1753