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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018391.1_11322_19400_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11322 - 19400
Intron Length:
8079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCACTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TCTTTCTCCACT
Flanking Amino Acid:
YPTSSPGYAPATLLMKQAWP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
67.9
0.4
1
65.4
35.2
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
57.9
0.33
2
79.4
43

Associated Gene:

Gene:
FAM168A
Ensembl Gene ID:
ENSAPLG00000018653
Chromosome:
PEDO01018391.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037013
10896 - 24160
13265