Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018417.1_9716_10987_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9716 - 10987

Intron Length:

1272

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGT|GCAGGCGAA

5'SS Class:

weak_major

3'SS Sequence:

CGCCCCCGGCCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCCGGAG

U12 Branch Point Sequence:

CTTGCCGGAGGC

Flanking Amino Acid:

GFWAKRLPHWVAFSLAAWMR

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.5

0.11

1.4

51.8

42.1

Major BPS

35.1

-0.9

1.6

24.7

36.4

Major PPT

53.7

0.08

45.8

36.6

Minor 5ss

25.9

-2.8

4.4

47.6

Minor BPS

37.7

-0.9

2.4

50.45

46.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028796

Chromosome:

PEDO01018417.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018439

7978 - 11159

3182