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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018434.1_725_885_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

725 - 885

Intron Length:

161

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGACC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCACAA

U12 Branch Point Sequence:

CACCCCACAAGG

Flanking Amino Acid:

RGLHHKLFYKRFHKPHHLWK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

34.7

Major BPS

47.4

-0.1

52.5

32.6

Major PPT

79.6

0.67

0.8

74.1

31.1

Minor 5ss

32.1

-2

3.3

43.2

44.2

Minor BPS

39.7

-0.9

39.21

43.7

Associated Gene:

Gene:

SC5D

Ensembl Gene ID:

ENSAPLG00000013738

Chromosome:

PEDO01018434.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047342

92 - 1308

1217

ENSAPLT00000014305

92 - 1817

1726