About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018439.1_741_828_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
741 - 828
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
ACACCACTGACG
Flanking Amino Acid:
LPNCTKVKQKQQKAALLKNS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
72.2
0.5
0.7
64.9
23.7
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
43.1
-0.6
1.9
45.52
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016978
Chromosome:
PEDO01018439.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027823
144 - 1206
1063