Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018470.1_1980_2086_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1980 - 2086

Intron Length:

107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGGGG

5'SS Class:

major

3'SS Sequence:

TGTCCCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCAGAC

U12 Branch Point Sequence:

TGGCCGTGCAGA

Flanking Amino Acid:

GTGPVHPALAGMTGILMCAA

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.2

58.7

46.2

Major BPS

49.6

-0

1.1

46.4

38.9

Major PPT

75.8

0.58

0.8

69.4

31.1

Minor 5ss

34.2

-1.8

3.6

46.8

48.5

Minor BPS

35.8

-1.1

2.5

46.13

43.1

Associated Gene:

Gene:

DTX1

Ensembl Gene ID:

ENSAPLG00000003785

Chromosome:

PEDO01018470.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003888

21 - 4959

4939