Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018492.1_1079_1768_R

Intron Information:

Intron Rank:

140395

Intron Class:

major

Intron Phase:

Intron Coordinates:

1079 - 1768

Intron Length:

690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTTTA

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TCTCTTCTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

80.2

30.7

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

83.4

0.75

0.7

80.4

24.9

Minor 5ss

36.9

-1.5

3.2

48.5

47.7

Minor BPS

45.1

-0.3

1.9

64.82

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022914

Chromosome:

PEDO01018492.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032355

21 - 1895

1875