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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018504.1_600_660_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
600 - 660
Intron Length:
61

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAACAGTA
5'SS Class:
major
3'SS Sequence:
GAGCAATGGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATAT
Flanking Amino Acid:
KVTEEFFHQGNHSCLQINSD
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
68.9
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
40.2
-0.5
1.7
35.7
44.4
Minor 5ss
41.3
-1
3.5
56
42.8
Minor BPS
49.1
0.01
1.8
68.5
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002471
Chromosome:
PEDO01018504.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023991
482 - 6020
5539