Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018513.1_1513_2041_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1513 - 2041

Intron Length:

529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGGGTCGC

5'SS Class:

major

3'SS Sequence:

TTGTCTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCGGCAC

U12 Branch Point Sequence:

TCGGCACCGACA

Flanking Amino Acid:

DLLGGGLDSLLRSDVGGSPA

Intron Amino Acid Position:

461

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.1

55.8

43.4

Major BPS

-0.3

1.5

44.3

Major PPT

86.1

0.81

0.8

81.1

30.9

Minor 5ss

27.9

-2.5

31.9

37.4

Minor BPS

39.4

-0.8

2.1

48.39

42.1

Associated Gene:

Gene:

AP1B1

Ensembl Gene ID:

ENSAPLG00000028207

Chromosome:

PEDO01018513.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041619

373 - 3644

3272