About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018513.1_534_1004_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
534 - 1004
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGT
5'SS Class:
major
3'SS Sequence:
CCCCCCCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAC
U12 Branch Point Sequence:
CCCCCCCAAACC
Flanking Amino Acid:
SDFAIQFNRNSFGLAPAAPL
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
69.2
38.8
Major BPS
47
-0.1
1
50.5
30.4
Major PPT
69.9
0.45
0.8
60.4
29.4
Minor 5ss
29.5
-2.3
3.8
46.4
49
Minor BPS
45.1
-0.3
2
52.17
45.2

Associated Gene:

Gene:
AP1B1
Ensembl Gene ID:
ENSAPLG00000028207
Chromosome:
PEDO01018513.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041619
373 - 3644
3272
ENSAPLT00000021674
373 - 3644
3272
ENSAPLT00000043853
373 - 3644
3272