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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018518.1_3872_3991_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3872 - 3991
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGCCAT
U12 Branch Point Sequence:
CAGCCGGGGACC
Flanking Amino Acid:
SAKKHVRLQERRGSNVSLML
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
47.8
-0.1
1.6
58.2
48.3
Major PPT
80
0.68
0.8
77
31.7
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
34.5
-1.2
2.4
40.32
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023979
Chromosome:
PEDO01018518.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035805
2923 - 4364
1442