Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018520.1_4292_5529_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4292 - 5529

Intron Length:

1238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGAAAA

5'SS Class:

major

3'SS Sequence:

GCGCGCCCCGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCCGAC

U12 Branch Point Sequence:

GCCCTGCCGACG

Flanking Amino Acid:

YVEGMDLSPKEIIERVKSGE

Intron Amino Acid Position:

497

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

33.3

Major BPS

47.5

-0.1

1.3

43.8

40.8

Major PPT

58.9

0.2

0.9

50.3

34.1

Minor 5ss

25.9

-2.8

30.2

43.1

Minor BPS

31.7

-1.5

2.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018212

Chromosome:

PEDO01018520.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029696

21 - 5636

5616