About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018579.1_2619_2722_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2619 - 2722
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCAACCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAACC
Flanking Amino Acid:
LNSTKKPPKKASEKPESAQQ
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
70
0.45
0.9
61.4
34.7
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
70.7
0.63
1.5
78.1
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006561
Chromosome:
PEDO01018579.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006820
257 - 3847
3591