Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018579.1_502_633_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

502 - 633

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAATC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTCCGGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTTTTTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

35.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

72.6

0.51

0.9

70.4

30.6

Minor 5ss

36.6

-1.5

3.3

51.4

45.5

Minor BPS

63.5

0.5

1.6

78.46

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006561

Chromosome:

PEDO01018579.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024229

257 - 3847

3591

ENSAPLT00000006820

257 - 3847

3591