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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018582.1_321_399_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
321 - 399
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCGGGGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCATGTCACC
Flanking Amino Acid:
LRQMAQPFHKEDQLGLSLLT
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
49.6
-0
1
45.1
30.8
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
41.5
-0.6
2.4
56.02
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030641
Chromosome:
PEDO01018582.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040665
21 - 1410
1390