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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018587.1_1445_1535_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1445 - 1535
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CCCCGCTGAGCT
Flanking Amino Acid:
PAEHVELFFQKMDRNGDGVV
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
42
-0.5
2
53.75
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027308
Chromosome:
PEDO01018587.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033381
1128 - 1637
510