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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018603.1_1317_1693_F

Intron Information:

Intron Rank:
126825
Intron Class:
major
Intron Phase:
Intron Coordinates:
1317 - 1693
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAACTCC
5'SS Class:
major
3'SS Sequence:
GTTTCTCTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCGTAC
U12 Branch Point Sequence:
TTGCCCGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60
40.2
Major BPS
42.8
-0.4
1.2
34.6
32.8
Major PPT
71.9
0.49
1
66.3
40.7
Minor 5ss
39.9
-1.1
2.9
51.9
44.9
Minor BPS
48.7
-0
2.3
72.86
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018326
Chromosome:
PEDO01018603.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028506
21 - 2164
2144