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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018615.1_2143_2307_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2143 - 2307
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTTGAA
5'SS Class:
major
3'SS Sequence:
TAAATCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
SKHESARDVRRVAAHEYEPP
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.7
34.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.7
0.53
1
65.9
40.3
Minor 5ss
25.6
-2.8
3.1
31.4
42.7
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011592
Chromosome:
PEDO01018615.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012058
1718 - 3731
2014