Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_127343_127447_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

127343 - 127447

Intron Length:

105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGGAGC

5'SS Class:

major

3'SS Sequence:

TCCTGCATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTGCAT

U12 Branch Point Sequence:

CTCTCCTGCATT

Flanking Amino Acid:

LLRKAIKKRGDFDIDIVAVV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

67.8

43.5

Major BPS

50.1

1.4

43.2

Major PPT

77.2

0.61

0.9

73.5

35.7

Minor 5ss

32.2

-2

3.1

34.8

41.4

Minor BPS

53.1

0.18

72.16

45.3

Associated Gene:

Gene:

HK2

Ensembl Gene ID:

ENSAPLG00000011882

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024414

119387 - 128664

9278