About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_129229_133942_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129229 - 133942
Intron Length:
4714

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCGAGAGAC
5'SS Class:
major
3'SS Sequence:
CCTGCAGCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCAGGAT
U12 Branch Point Sequence:
AGCCCTGCAGCT
Flanking Amino Acid:
LGKREKVLEKLGHRALGCCC
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
67.5
37.8
Major BPS
41.9
-0.5
1.5
33.4
42.7
Major PPT
65.5
0.35
1
54.3
40.5
Minor 5ss
16.7
-3.8
3.7
23.7
30.1
Minor BPS
38.7
-0.7
2.1
52.72
42.2

Associated Gene:

Gene:
HK2
Ensembl Gene ID:
ENSAPLG00000011882
Chromosome:
PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021741
120194 - 134020
13827