Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_15173_15454_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15173 - 15454

Intron Length:

282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCCCC

5'SS Class:

major

3'SS Sequence:

TGTGTTTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

TCATGTGAGACT

Flanking Amino Acid:

ITPMEALAEQVFMDWYEKFQ

Intron Amino Acid Position:

1338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

1.1

61.6

41.6

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

76.1

0.59

72.9

42.2

Minor 5ss

37.7

-1.4

3.3

51.2

45.5

Minor BPS

39.4

-0.7

2.5

58.55

45.4

Associated Gene:

Gene:

SNRNP200

Ensembl Gene ID:

ENSAPLG00000004313

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031008

639 - 20092

19454

ENSAPLT00000004616

21 - 20092

20072