Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_19612_19707_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19612 - 19707

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCAGG

5'SS Class:

strong_major

3'SS Sequence:

CCTCGCTGCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCAACAC

U12 Branch Point Sequence:

GCAGCCCCAACA

Flanking Amino Acid:

KRLTLQQKAKVKLDFVAPAT

Intron Amino Acid Position:

2039

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.8

43.8

Major BPS

44.5

-0.3

46.6

34.6

Major PPT

61.2

0.25

0.9

53.2

36.7

Minor 5ss

33.3

-1.9

2.8

39.7

45.9

Minor BPS

45.7

-0.3

54.21

43.8

Associated Gene:

Gene:

SNRNP200

Ensembl Gene ID:

ENSAPLG00000004313

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004616

21 - 20092

20072

ENSAPLT00000031008

639 - 20092

19454