Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_3561_3744_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3561 - 3744

Intron Length:

184

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTGAGTGGT

5'SS Class:

major

3'SS Sequence:

TTCCTCTCTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

CATCTCTTAATT

Flanking Amino Acid:

IKVLRQHRMMILYCTLLASA

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

40.1

Major BPS

0.92

0.9

86.2

29.1

Major PPT

86.5

0.82

0.7

84.7

23.1

Minor 5ss

30.2

-2.3

3.2

36.6

41.7

Minor BPS

70.6

0.72

1.2

78.1

38.4

Associated Gene:

Gene:

SNRNP200

Ensembl Gene ID:

ENSAPLG00000004313

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031008

639 - 20092

19454

ENSAPLT00000004616

21 - 20092

20072