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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_62050_62164_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
62050 - 62164
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GC-CG
5'SS Sequence:
CCT|GCGAGCACC
5'SS Class:
weak_major
3'SS Sequence:
TGCCCGCTCACCG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TGCCCGCTCACC
Flanking Amino Acid:
QPGFLRLHYHLVVQHQLLQR
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.5
63.4
39.7
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
39.3
-0.6
3.1
52.5
36.8
Minor 5ss
27.8
-2.5
3.9
45.4
42.5
Minor BPS
40.1
-0.8
2.5
53.33
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020286
Chromosome:
PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030755
61882 - 76825
14944