Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_64100_64193_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64100 - 64193

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCCCCG

5'SS Class:

major

3'SS Sequence:

TCCCTGTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCATGAC

U12 Branch Point Sequence:

CCCCCCATGACG

Flanking Amino Acid:

GGAAQLREAQDVLRGQPPRP

Intron Amino Acid Position:

254

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.8

0.3

1.3

48.3

47.8

Major BPS

49.9

-0

1.2

37.8

Major PPT

72.9

0.52

0.8

64.4

36.6

Minor 5ss

42.7

-0.8

3.1

57.6

46.6

Minor BPS

47.8

-0.3

1.8

48.86

44.9

Associated Gene:

Gene:

DDX56

Ensembl Gene ID:

ENSAPLG00000025410

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047683

61882 - 64849

2968

ENSAPLT00000035028

61882 - 64762

2881