Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_64831_66189_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64831 - 66189

Intron Length:

1359

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCCGGTG

5'SS Class:

major

3'SS Sequence:

CCTTGCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCACAC

U12 Branch Point Sequence:

TGAGCCCCCACA

Flanking Amino Acid:

VPCGWLCAIKAAPQLTPIHR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.1

0.29

1.2

44.1

Major BPS

47.2

-0.1

52.2

32.7

Major PPT

75.2

0.57

0.8

68.7

31.7

Minor 5ss

31.9

-2.1

3.8

49.3

Minor BPS

41.6

-0.6

2.2

54.21

43.8

Associated Gene:

Gene:

NPC1L1

Ensembl Gene ID:

ENSAPLG00000010428

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039450

64783 - 76825

12043