Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_69042_69123_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

69042 - 69123

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAACGGCC

5'SS Class:

major

3'SS Sequence:

GGTCCTGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

GGGTGCTGAATG

Flanking Amino Acid:

GEYTAWRRVLVESKVTLALG

Intron Amino Acid Position:

661

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.3

0.41

1.2

61.1

39.4

Major BPS

0.42

1.1

57.3

41.7

Major PPT

64.9

0.34

57.6

38.5

Minor 5ss

36.2

-1.6

3.6

47.7

43.5

Minor BPS

-0.3

1.9

49.75

44.1

Associated Gene:

Gene:

NPC1L1

Ensembl Gene ID:

ENSAPLG00000010428

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039450

64783 - 76825

12043

ENSAPLT00000010896

65966 - 76305

10340