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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_71796_71872_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71796 - 71872

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

CACCTCTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCAGCAC

U12 Branch Point Sequence:

CCAGCCCCACCT

Flanking Amino Acid:

MIQYATRFPNVSYLAIPATS

Intron Amino Acid Position:

942

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.1

56.1

43.1

Major BPS

41.5

-0.5

1.3

37.8

Major PPT

65.1

0.34

0.9

56.8

38.4

Minor 5ss

28.6

-2.5

3.1

31.9

42.5

Minor BPS

40.3

-0.6

2.1

53.28

47.5

Associated Gene:

Gene:

NPC1L1

Ensembl Gene ID:

ENSAPLG00000010428

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010896

65966 - 76305

10340

ENSAPLT00000039450

64783 - 76825

12043