Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_72001_72983_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72001 - 72983

Intron Length:

983

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

GCCGTGCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

TGCTTCCCACTG

Flanking Amino Acid:

LAGQFCPSTSNDISCLLGQC

Intron Amino Acid Position:

985

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

57.2

42.1

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

61.5

0.26

0.9

52.8

36.9

Minor 5ss

28.8

-2.4

3.1

36.7

41.6

Minor BPS

40.3

-0.8

44.24

42.1

Associated Gene:

Gene:

NPC1L1

Ensembl Gene ID:

ENSAPLG00000010428

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039450

64783 - 76825

12043

ENSAPLT00000010896

65966 - 76305

10340