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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_73477_74138_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

73477 - 74138

Intron Length:

662

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGCCTC

5'SS Class:

major

3'SS Sequence:

ACAATCCCGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGACAAT

U12 Branch Point Sequence:

GCAGCGGTGACA

Flanking Amino Acid:

TDPDFRVFPYTVTYVYYEQY

Intron Amino Acid Position:

1094

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.3

67.1

44.6

Major BPS

1.4

59.1

44.1

Major PPT

57.6

0.17

51.5

38.3

Minor 5ss

43.8

-0.7

3.1

59.2

38.7

Minor BPS

-0.8

2.5

47.12

43.1

Associated Gene:

Gene:

NPC1L1

Ensembl Gene ID:

ENSAPLG00000010428

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039450

64783 - 76825

12043

ENSAPLT00000010896

65966 - 76305

10340