Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_8940_9710_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8940 - 9710

Intron Length:

771

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

GCTGCTCCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TTTTGCTGATCA

Flanking Amino Acid:

EDLFADKHIQVLVSTATLAW

Intron Amino Acid Position:

757

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

73.2

0.52

0.9

65.1

36.4

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

55.4

0.16

2.1

76.27

40.9

Associated Gene:

Gene:

SNRNP200

Ensembl Gene ID:

ENSAPLG00000004313

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031008

639 - 20092

19454

ENSAPLT00000004616

21 - 20092

20072