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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_91826_92269_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91826 - 92269
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGCACG
5'SS Class:
major
3'SS Sequence:
CCCCCCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGGT
U12 Branch Point Sequence:
CCCCCCCCCACA
Flanking Amino Acid:
QLALVGADRYWSIDGLLRPQ
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
55
43.8
Major BPS
26.2
-1.5
4.1
42.8
49.4
Major PPT
67.6
0.4
0.7
60.1
22.4
Minor 5ss
33
-1.9
3.1
37
41.6
Minor BPS
39.7
-0.8
2.1
45.3
43.7

Associated Gene:

Gene:
GGCX
Ensembl Gene ID:
ENSAPLG00000017930
Chromosome:
PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036558
89777 - 95238
5462