About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_92800_92890_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92800 - 92890
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
CCGTCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GGGTCCCTAATA
Flanking Amino Acid:
HCMNSQLFSIGMFSYTMLAS
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
60.5
40.3
Major BPS
80
0.75
1
78.6
31
Major PPT
67.6
0.4
0.8
57.9
33.2
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
59.1
0.28
1.7
65.88
40.4

Associated Gene:

Gene:
GGCX
Ensembl Gene ID:
ENSAPLG00000017930
Chromosome:
PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036558
89777 - 95238
5462