Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_94122_94200_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

94122 - 94200

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGGGCA

5'SS Class:

major

3'SS Sequence:

TGGCGGGGCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTTAA

U12 Branch Point Sequence:

TTAACCCAAACC

Flanking Amino Acid:

TDVVFIADFPGLHLENFVSE

Intron Amino Acid Position:

464

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

63.1

37.1

Major BPS

58.3

0.21

1.1

49.4

37.6

Major PPT

49.8

-0

1.1

41.7

Minor 5ss

24.5

-2.9

3.3

30.5

42.8

Minor BPS

51.3

0.02

69.11

41.8

Associated Gene:

Gene:

GGCX

Ensembl Gene ID:

ENSAPLG00000017930

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036558

89777 - 95238

5462