Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018640.1_94555_94765_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

94555 - 94765

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGCCCT

5'SS Class:

major

3'SS Sequence:

TCGCCCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACCGAA

U12 Branch Point Sequence:

CACCCCCAAACC

Flanking Amino Acid:

ELRERVQNGTETEPLPPELR

Intron Amino Acid Position:

557

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

62.7

43.4

Major BPS

47.2

-0.1

1.1

42.1

30.6

Major PPT

68.5

0.42

0.8

61.8

28.8

Minor 5ss

35.5

-1.6

3.2

49.8

Minor BPS

45.6

-0.3

53.58

43.8

Associated Gene:

Gene:

GGCX

Ensembl Gene ID:

ENSAPLG00000017930

Chromosome:

PEDO01018640.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036558

89777 - 95238

5462