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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018643.1_1330_1434_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1330 - 1434
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TTATTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
QKLANWGHLNRKVLRKLNLS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.3
0.75
0.8
82.5
33.6
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
SPEF1
Ensembl Gene ID:
ENSAPLG00000023531
Chromosome:
PEDO01018643.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020024
33 - 1717
1685