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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018657.1_1341_1423_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1341 - 1423
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CCCAAAACCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TTGTCCCCAAAA
Flanking Amino Acid:
GPGQRWEPPKAVTFGGQWEP
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
56
0.14
0.9
47.2
33.7
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
52.1
0.06
2
70.14
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021667
Chromosome:
PEDO01018657.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033567
21 - 2060
2040