Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018657.1_1606_1922_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1606 - 1922

Intron Length:

317

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CGTCCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCGAG

U12 Branch Point Sequence:

CAGCTCCGAGCC

Flanking Amino Acid:

VVGLGPERLLRELLRLLAAT

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

-0.4

1.6

41.5

41.3

Major PPT

68.2

0.41

0.8

58.1

33.1

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

38.9

-0.8

1.8

42.43

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021667

Chromosome:

PEDO01018657.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033567

21 - 2060

2040