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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018661.1_1004_1114_F

Intron Information:

Intron Rank:
137727
Intron Class:
major
Intron Phase:
Intron Coordinates:
1004 - 1114
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024170
Chromosome:
PEDO01018661.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041713
21 - 1926
1906