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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018664.1_10695_10825_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10695 - 10825
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
CTGGTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAG
U12 Branch Point Sequence:
CTTCCCAGAGCT
Flanking Amino Acid:
VRDYLEARLEASFGKQRLHF
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
49.3
-0
1.7
66.4
42.2
Major PPT
75.5
0.57
0.9
65.7
41
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
47.9
-0
2
71.85
44.3

Associated Gene:

Gene:
SCLY
Ensembl Gene ID:
ENSAPLG00000007985
Chromosome:
PEDO01018664.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008313
8411 - 13730
5320