Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018664.1_10910_11275_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10910 - 11275

Intron Length:

366

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TGGGTCTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

GCTGAGGGAACC

Flanking Amino Acid:

NTPMIAGLGKAAELVSRNWE

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.8

72.2

39.5

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

69.6

0.44

0.9

40.8

Minor 5ss

26.6

-2.7

31.5

42.8

Minor BPS

-1.2

2.5

44.44

43.4

Associated Gene:

Gene:

SCLY

Ensembl Gene ID:

ENSAPLG00000007985

Chromosome:

PEDO01018664.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008313

8411 - 13730

5320