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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018664.1_11313_11436_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11313 - 11436
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGCAA
U12 Branch Point Sequence:
AAGTCCCTACCC
Flanking Amino Acid:
GGGQERSFRPGTENTPMIAG
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
64.8
42.3
Major BPS
49.7
-0
1.3
61.4
36.2
Major PPT
85.7
0.8
0.7
77.3
31.5
Minor 5ss
36.6
-1.5
3.3
41.6
45.3
Minor BPS
50.1
-0
2
62.86
42.2

Associated Gene:

Gene:
SCLY
Ensembl Gene ID:
ENSAPLG00000007985
Chromosome:
PEDO01018664.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008313
8411 - 13730
5320